Paul Onuachu scored Nigeria lone goal in 93 minutes of the match in Saturday’s Africa Cup of Nations (AFCON) qualifier in Cotonou.
Onuachu came in as a substitute for Leicester City of England striker, Kelechi Iheanacho in the 71 minutes.
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Meanwhile, Super Eagle already qualified for the AFCON tournament before the match after Lesotho and Sierra Leone played a goalless draw.
Nigeria now comfortable lead the table with 11 points followed by Benin 7point while Sierra Leone and Lesotho are with 4 and 3 points respectively.